Models

13 Models visible to you, out of a total of 19

The Assmus model taken from JWS Online at - http://jjj.mib.ac.uk/models/assmus/

The 2nd version has been modified, to demonstrate use of the BiVeS tool for comparison ( https://sems.uni-rostock.de/projects/bives/ )

To view the comparison, you need to be logged in (you can login as guest), and click the button for the version you wish to compare with the current displayed version in the box below...

Creator: Stuart Owen

Contributor: Stuart Owen

An exponential decay model was fitted to the experimental data set of DHAP degradation at 70C. The model is uploaded as an SBML file. A data file showing the model fit to the experimental data set is included. The rate constant for DHAP degradation at 70C was estimated to be 0.0225 1/min, equivalent to a half life time of 30.8 min.

Creator: Jacky Snoep

Contributor: Jacky Snoep

Mathematical model for FBPAase kinetics

Creator: Jacky Snoep

Contributor: Jacky Snoep

An exponential decay model was fitted to the experimental data set of GAP degradation at 70C. The model is uploaded as an SBML file. A data file showing the model fit to the experimental data set is included. The rate constant for GAP degradation at 70C was estimated to be 0.056 1/min, equivalent to a half life time of 12.4 min.

Creator: Jacky Snoep

Contributor: Jacky Snoep

Mathematical model for GAPDH kinetics, saturation for GAP, BPG, NADP, NADPH, Pi.

Creator: Jacky Snoep

Contributor: Jacky Snoep

Detailed kinetic model for glycolysis of the trophozoite stage of Plasmodium falciparum

Creator: Jacky Snoep

Contributor: Jacky Snoep

Detailed kinetic model for glycolysis of L. lactis. The model is basically the same model as that published by Hoefnagel et al 2002 (Mol. Biol. Reports 29, 157-161). The change made to the model is to make external glucose a variable such that a glucose pulse can be simulated.

Creators: Jacky Snoep, Ana Rute Neves

Contributor: Katy Wolstencroft

The PGK, GAPDH, TPI and FBPAase were modelled together using the individual rate equations. Closed system.

Creator: Jacky Snoep

Contributor: Jacky Snoep

MCA of Glycerol Synthesis in Saccharomyces cerevisiae

Creators: Jacky Snoep, Garth R. Cronwright, Johann M. Rohwer, and Bernard A. Prior

Contributor: Katy Wolstencroft

No description specified

Creator: Natalie Stanford

Contributor: Natalie Stanford

No description specified

Creator: Guest

Contributor: Guest

This model is for a paper that examines whether the in vivo behavior of yeast glycolysis can be understood in terms of the in vitro kinetic properties of the constituent enzymes. In non-growing, anaerobic, compressed Saccharomyces cerevisiae the values of the kinetic parameters of most glycolytic enzymes were determined. For the other enzymes appropriate literature values were collected. By inserting these values into a kinetic model for glycolysis, fluxes and metabolites were calculated. Under
...

Creator: Stuart Owen

Contributor: Stuart Owen

Mathematical model for TIM kinetics, GAP and DHAP saturation and PEP inhibition.

Creator: Jacky Snoep

Contributor: Jacky Snoep

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