Models

An exponential decay model was fitted to the experimental data set of DHAP degradation at 70C. The model is uploaded as an SBML file. A data file showing the model fit to the experimental data set is included. The rate constant for DHAP degradation at 70C was estimated to be 0.0225 1/min, equivalent to a half life time of 30.8 min.

Creator: Jacky Snoep

Contributor: Jacky Snoep

Mathematical model for FBPAase kinetics

Creator: Jacky Snoep

Contributor: Jacky Snoep

An exponential decay model was fitted to the experimental data set of GAP degradation at 70C. The model is uploaded as an SBML file. A data file showing the model fit to the experimental data set is included. The rate constant for GAP degradation at 70C was estimated to be 0.056 1/min, equivalent to a half life time of 12.4 min.

Creator: Jacky Snoep

Contributor: Jacky Snoep

Mathematical model for GAPDH kinetics, saturation for GAP, BPG, NADP, NADPH, Pi.

Creator: Jacky Snoep

Contributor: Jacky Snoep

Detailed kinetic model for glycolysis of the trophozoite stage of Plasmodium falciparum

Creator: Jacky Snoep

Contributor: Jacky Snoep

Detailed kinetic model for glycolysis of L. lactis. The model is basically the same model as that published by Hoefnagel et al 2002 (Mol. Biol. Reports 29, 157-161). The change made to the model is to make external glucose a variable such that a glucose pulse can be simulated.

Creators: Jacky Snoep, Ana Rute Neves

Contributor: Katy Wolstencroft

The PGK, GAPDH, TPI and FBPAase were modelled together using the individual rate equations. Closed system.

Creator: Jacky Snoep

Contributor: Jacky Snoep

MCA of Glycerol Synthesis in Saccharomyces cerevisiae

Creators: Jacky Snoep, Garth R. Cronwright, Johann M. Rohwer, and Bernard A. Prior

Contributor: Katy Wolstencroft

Mathematical model for TIM kinetics, GAP and DHAP saturation and PEP inhibition.

Creator: Jacky Snoep

Contributor: Jacky Snoep

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