Assays

Find some moths

Contributor: Guest

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

Assay to measure metabolites of yeast saccharomyces cerevisiae under different nutrient limitations

Limiting Nutrients:
ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur

This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)

Contributor: Katy Wolstencroft

Assay type: Metabolite Profiling

Technology type: Mass Spectrometry

Snapshots: No snapshots

Assay to measure protein expression in yeast saccharomyces cerevisiae under different nutrient limitations

Limiting Nutrients:
ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur

This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)

Contributor: Katy Wolstencroft

Assay type: Protein Expression Profiling

Technology type: Mass Spectrometry

Snapshots: No snapshots

Assay to measure gene expression of Saccharomyces cerevisiae (yeast) under different nutrient limitations

Limiting Nutrients:
ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur

This data is public data taken from the BioInvestigation Index.

(http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)

Contributor: Katy Wolstencroft

Assay type: Transcriptional Profiling

Technology type: Microarray

Snapshots: No snapshots

Sharing well-annotated research data helps the systems biology process.

This practical is about how to easily structure your experimental data such that it becomes well annotated, standard compliant, reproducible, and re-usable (also for others). While much big data travels from machine to machine without human intervention, we will focus on exchange of small data describing experiments which is (to our experience) mostly handled via MS Excel and similar tools. First we give an outline talk about
...

Contributor: Olga Krebs

Assay type: Experimental Assay Type

Technology type: Technology Type

Snapshots: No snapshots

An assay to measure exttracellular glycerol using HPLC

Contributor: Katy Wolstencroft

Assay type: Metabolite Profiling

Technology type: HPLC

Snapshots: No snapshots

A kinetic model of the glycerol synthesis pathway has been constructed. Kinetic parameters were collected from published values. Maximal enzyme activities and intracellular effector concentrations were determined experimentally.

Contributor: Katy Wolstencroft

Biological problem addressed: Metabolism

Snapshots: No snapshots

Glycolysis in Saccharomyces cerevisiae

Contributor: Guest

Biological problem addressed: Metabolism

Snapshots: No snapshots

Intracellular metabolite concentrations were determined enzymatically by measuring the oxidation or reduction of NADH or NAD+, respectively, at 340 nm in a Beckman Coulter DU640 spectrophotometer

No description specified

Contributor: Katy Wolstencroft

Assay type: Glucose Pulse

Technology type: NMR

Snapshots: No snapshots

Assay for transcriptional profiling time course in yeast treated with rapamycin

This is public data from the BioInvestigation Index (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-2)

Detailed glycolytic model in Lactococcus lactis

Contributor: Katy Wolstencroft

Biological problem addressed: Metabolic Network

Snapshots: No snapshots

Assay for transcriptional profiling time course in yeast

Contributor: Guest

Assay type: Transcriptomics

Technology type: Microarray

Snapshots: No snapshots

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