Assays
What is an Assay?Filters
Assay for transcriptional profiling time course in yeast
Submitter: Guest
Assay type: Transcriptomics
Technology type: Microarray
Investigation: Methods for interrelating 'omics data
Study: 1 hidden item
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Submitter: Guest
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
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Submitter: Guest
Assay type: Transcriptomics
Technology type: Rna-seq
Investigation: An Investigation Today
Assay to measure gene expression of Saccharomyces cerevisiae (yeast) under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index.
(http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Assay to measure metabolites of yeast saccharomyces cerevisiae under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Metabolite Profiling
Technology type: Mass Spectrometry
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Assay to measure protein expression in yeast saccharomyces cerevisiae under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Protein Expression Profiling
Technology type: Mass Spectrometry
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Assay for transcriptional profiling time course in yeast treated with rapamycin
This is public data from the BioInvestigation Index (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-2)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Growth control of the eukaryote cell: a systems...
Glycolysis in Saccharomyces cerevisiae
Submitter: Guest
Biological problem addressed: Metabolism
Investigation: Growth control of the eukaryote cell: a systems...
Submitter: Katy Wolstencroft
Assay type: Glucose Pulse
Technology type: NMR
Investigation: Glycolitic Flux in Lactococcus lactis
Detailed glycolytic model in Lactococcus lactis
Submitter: Katy Wolstencroft
Biological problem addressed: Metabolic Network
Investigation: Glycolitic Flux in Lactococcus lactis
A kinetic model of the glycerol synthesis pathway has been constructed. Kinetic parameters were collected from published values. Maximal enzyme activities and intracellular effector concentrations were determined experimentally.
Submitter: Katy Wolstencroft
Biological problem addressed: Metabolism
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
An assay to measure exttracellular glycerol using HPLC
Submitter: Katy Wolstencroft
Assay type: Metabolite Profiling
Technology type: HPLC
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
Intracellular metabolite concentrations were determined enzymatically by measuring the oxidation or reduction of NADH or NAD+, respectively, at 340 nm in a Beckman Coulter DU640 spectrophotometer
Submitter: Katy Wolstencroft
Assay type: Intracellular Metabolite Concentration
Technology type: Enzymatic Activity Measurements
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
Sharing well-annotated research data helps the systems biology process.
This practical is about how to easily structure your experimental data such that it becomes well annotated, standard compliant, reproducible, and re-usable (also for others). While much big data travels from machine to machine without human intervention, we will focus on exchange of small data describing experiments which is (to our experience) mostly handled via MS Excel and similar tools. First we give an outline talk about ...
Submitter: Olga Krebs
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Methods for interrelating 'omics data
Study: 1 hidden item
Find some moths
Submitter: Guest
Biological problem addressed: Model Analysis Type
Investigation: The moth investigation
Study: The moth study