Expertise: Biochemistry, Bioinformatics, Data Management
Tools: Data Management, Transcriptomics, Databases, Workflows, Web services, Taverna, Ontologies
I am a Research Fellow at the University of Manchester, working in Bioinformatics and Computer Science. I am also a guest researcher at the Vrije Universiteit.My research interests include scientific workflows, semantic discovery, and applying ontology technologies to biological data
Projects: SysMO DB, FAIRDOM training
Institutions: HITS gGmbH
Roles: Project Coordinator
Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics
Tools: Databases, data modeling, ontology
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project
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Projects: SysMO DB, Synthetic Biology Manchester Demo, FAIRDOM training
Institutions: School of Computer Science, University of Manchester, Autonomous University of Barcelona, HITS gGmbH
Roles: Project Coordinator, Vice Coordinator
Expertise: Transcriptomics, Proteomics, Microarray
Tools: Molecular Biology, Transcriptomics, Fermentation
Special guest appearance from Charles Darwin himself!
Assay for transcriptional profiling time course in yeast
Investigation: Methods for interrelating 'omics data
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: 1 hidden item
Scales: Not specified
Assay to measure gene expression of Saccharomyces cerevisiae (yeast) under different nutrient limitations
Limiting Nutrients:
ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index.
(http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Snapshots: No snapshots
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Organisms: Saccharomyces cerevisiae
SOPs: 1 hidden item
Data files: a_transcriptome from BII-S-1
Scales: Not specified
Assay for transcriptional profiling time course in yeast treated with rapamycin
This is public data from the BioInvestigation Index (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-2)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Snapshots: No snapshots
Investigation: Growth control of the eukaryote cell: a systems...
Study: A time course analysis of transcription respon...
Organisms: Saccharomyces cerevisiae
SOPs: Nutrient_limited_stationary
Data files: a_microarray from BII-S-2
Scales: Not specified
Creator: Jacky Snoep
Submitter: Katy Wolstencroft
Investigations: Glycolitic Flux in Lactococcus lactis
Scales: Not specified