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This project contains materials for "Model management and result reproducibility" training at Managing Big Data tutorial on 5th of December 2016 in Potsdam.
The course will also explain how to build an effective Data Management strategy, needed if you apply for funds for a project.
The target group of this basic course are young scientists. This one day tutorial will give you insights in standard operation procedures (SOPs), experimental design, modelling design and a short introduction in SEEK. This training will give you an overview and hints how to plan your experiment and generate data which are consistent and valid for mathematical analysis.
This training is affiliated to a conference which will take place at December 6. Participation at the
conference is free for attendees of this workshop.
Programme: This Project is not associated with a Programme
SEEK ID: https://demo.fairdomhub.org/projects/16
Public web page: http://sb-sciencemanagement.com/training/training/managing-big-data
Organisms: Escherichia coli, Saccharomyces cerevisiae, Bacillus subtilis, Pseudomonas fluorescens
FAIRDOM PALs: No PALs for this Project
Project created: 30th Nov 2016
Related items
- People (5)
- Institutions (1)
- Investigations (1+6)
- Studies (1+5)
- Assays (1+6)
- Data files (2+5)
- Models (0+1)
- Publications (3)
- Presentations (0+7)
- Documents (0+2)
Projects: SysMO DB, FAIRDOM training
Institutions: HITS gGmbH
Roles: Project Coordinator
Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics
Tools: Databases, data modeling, ontology
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project
...
Projects: SulfoSys, SysMO DB, Synthetic Biology Manchester Demo, FAIRDOM training
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester, School of Computer Science, University of Manchester, Autonomous University of Barcelona, HITS gGmbH

Roles: Sysmo-DB Pal
Expertise: Software Engineering, Data Management, Software Architecture, Repositories
Tools: Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE
Lead Software Engineer and Architect on the FAIRDOM team based in Manchester.
Developing SEEK and RightField.
Projects: SysMO DB, FAIRDOM training
Institutions: HITS gGmbH
Projects: FAIRDOM training
Institutions: HITS gGmbH
Projects: SysMO DB, Synthetic Biology Manchester Demo, FAIRDOM training
Institutions: School of Computer Science, University of Manchester, Autonomous University of Barcelona, HITS gGmbH
Roles: Project Coordinator, Vice Coordinator
Expertise: Transcriptomics, Proteomics, Microarray
Tools: Molecular Biology, Transcriptomics, Fermentation
Special guest appearance from Charles Darwin himself!
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemistry, and biotechnology.
Snapshots: No snapshots
Studies: Frim1
Assays: frim1_assay
Scales: Not specified
About 580 tomato plants were grown in a greenhouse in the southwest of France (Sainte-Livrade sur Lot) during the summer of 2010 according to usual production practices.
Person responsible: Guest
Snapshots: No snapshots
Investigation: Frim
Assays: frim1_assay
Scales: Not specified
Submitter: Guest
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Frim
Study: Frim1
Organisms: No organisms
SOPs: No SOPs
Data files: Frim1 - datapackage
Scales: Not specified
Abstract (Expand)
Authors: F. A. Meineke, M. Lobe, S. Staubert
Date Published: 22nd Apr 2018
Publication Type: Not specified
PubMed ID: 29677996
Citation: Stud Health Technol Inform. 2018;247:426-430.
Scales: Not specified
Abstract (Expand)
Authors: M. D. Wilkinson, M. Dumontier, I. J. Aalbersberg, G. Appleton, M. Axton, A. Baak, N. Blomberg, J. W. Boiten, L. B. da Silva Santos, P. E. Bourne, J. Bouwman, A. J. Brookes, T. Clark, M. Crosas, I. Dillo, O. Dumon, S. Edmunds, C. T. Evelo, R. Finkers, A. Gonzalez-Beltran, A. J. Gray, P. Groth, C. Goble, J. S. Grethe, J. Heringa, P. A. 't Hoen, R. Hooft, T. Kuhn, R. Kok, J. Kok, S. J. Lusher, M. E. Martone, A. Mons, A. L. Packer, B. Persson, P. Rocca-Serra, M. Roos, R. van Schaik, S. A. Sansone, E. Schultes, T. Sengstag, T. Slater, G. Strawn, M. A. Swertz, M. Thompson, J. van der Lei, E. van Mulligen, J. Velterop, A. Waagmeester, P. Wittenburg, K. Wolstencroft, J. Zhao, B. Mons
Date Published: 16th Mar 2016
Publication Type: Not specified
PubMed ID: 26978244
Citation: Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18.
Scales: Not specified
Abstract (Expand)
Author: J. J. Tyson
Date Published: 15th Aug 1991
Publication Type: Not specified
PubMed ID: 1831270
Citation: Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7328-32.
Scales: Not specified