Guest

About Guest:

Special guest appearance from Charles Darwin himself!

SEEK ID: https://demo.fairdomhub.org/people/320

Locations: United Kingdom, Spain, Germany

Expertise: Microarray, Proteomics, Transcriptomics

Tools: Fermentation, Transcriptomics, Molecular Biology

ORCID: Not specified

Guest's tags

adp biodiversity Data Management Flux genome-scale metabolic models Kinetics Molecular Biology moth paper pISA potato Saccharomyces cerevisiae SBML Taverna Teusink Transcriptomics Web services

Project positions

Project Coordinator: SysMO DB (School of Computer Science, University of Manchester)

Vice Coordinator: Synthetic Biology Manchester Demo (Autonomous University of Barcelona)

Other Projects: FAIRDOM training (HITS gGmbH)

Related items

FAIRDOM training

This project contains materials for "Model management and result reproducibility" training at Managing Big Data tutorial on 5th of December 2016 in Potsdam.

The course will also explain how to build an effective Data Management strategy, needed if you apply for funds for a project.
The target group of this basic course are young scientists. This one day tutorial will give you insights in standard operation procedures (SOPs), experimental design, modelling design and a short introduction in SEEK.
...

Programme: This Project is not associated with a Programme

Public web page: http://sb-sciencemanagement.com/training/training/managing-big-data

Organisms: Bacillus subtilis, Escherichia coli, Pseudomonas fluorescens, Saccharomyces cerevisiae

SysMO DB

The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:

* facilitates and maximises the potential for data exchange between SysMO research groups;
* maximises the ‘shelf life’ and
...

Programme: SysMO

Public web page: http://www.sysmo-db.org/

Organisms: Saccharomyces cerevisiae, Lactic Acid Bacteria

Synthetic Biology Manchester Demo

No description specified

Programme: This Project is not associated with a Programme

Public web page: Not specified

Organisms: Not specified

HITS gGmbH

Country: Germany

City: Heidelberg

Web page: Not specified

School of Computer Science, University of Manchester

Country: United Kingdom

City: Manchester

Web page: http://www.cs.manchester.ac.uk/

Autonomous University of Barcelona

Country: Spain

City: Not specified

Web page: Not specified

The moth investigation

SysMO DB

Investigating moths

Snapshots: Snapshot 1, Snapshot 2, Snapshot 3

Studies: The moth study

Assays: Bupalus

Scales: Not specified

Created: 5th Jun 2015 at 11:04, Last updated: 13th Jan 2016 at 15:05

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The moth study

SysMO DB

Studying moths

Person responsible: Guest

Snapshots: No snapshots

Investigation: The moth investigation

Assays: Bupalus

Scales: Not specified

Created: 5th Jun 2015 at 11:05, Last updated: 13th Jan 2016 at 15:08

8 hidden items

Glycolysis in Saccharomyces cerevisiae

SysMO DB

Glycolysis in Saccharomyces cerevisiae

Contributor: Guest

Biological problem addressed: Metabolism

Snapshots: No snapshots

Investigation: Growth control of the eukaryote cell: a systems...

Study: Can yeast glycolysis be understood in terms of ...

Organisms: Saccharomyces cerevisiae (chemostat)

Models: Teusink and 1 hidden item

SOPs: No SOPs

Data files: No Data files

Scales: Not specified

Created: 5th Jul 2010 at 16:30, Last updated: 26th Oct 2017 at 11:57

Transcriptional profiling

SysMO DB

Assay for transcriptional profiling time course in yeast

Contributor: Guest

Assay type: Transcriptomics

Technology type: Microarray

Snapshots: No snapshots

Investigation: Methods for interrelating 'omics data

Study: 1 hidden item

Organisms: No organisms

SOPs: No SOPs

Data files: 1 hidden item

Scales: Not specified

Created: 9th Jul 2010 at 09:57, Last updated: 26th Oct 2017 at 11:57

Bupalus

SysMO DB

Find some moths

Contributor: Guest

Biological problem addressed: Model Analysis Type

Snapshots: No snapshots

Investigation: The moth investigation

Study: The moth study

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Moth data

Scales: Organism

Created: 5th Jun 2015 at 11:29, Last updated: 26th Oct 2017 at 11:57

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Agro Ontology

FAIRDOM training

Agriculture Ontology

Creator: Guest

Contributor: Guest

Investigations: 2 hidden items

Studies: 2 hidden items

Assays: 2 hidden items

Scales: Not specified

Download

Created: 28th Apr 2019 at 16:31, Last updated: 28th Apr 2019 at 16:31

demo data

SysMO DB

No description specified

Creator: Guest

Contributor: Guest

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

Download

Created: 5th Jul 2013 at 16:18, Last updated: 21st Dec 2018 at 14:41

Moth data

SysMO DB

No description specified

Creator: Guest

Contributor: Guest

Investigations: The moth investigation

Studies: The moth study

Assays: Bupalus

Scales: Organism

Download

Created: 5th Jun 2015 at 11:32, Last updated: 13th Jan 2016 at 15:08

cchung testing a URL

SysMO DB

No description specified

Creator: Guest

Contributor: Guest

Investigations: Methods for interrelating 'omics data

Studies: 1 hidden item

Assays: 1 hidden item

Scales: Organism

External Link

Created: 1st Jun 2015 at 17:32, Last updated: 1st Jun 2015 at 17:56

kol

SysMO DB

No description specified

Creator: Guest

Contributor: Guest

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

Download

Created: 18th Jul 2014 at 18:26, Last updated: 18th Jul 2014 at 18:26

View all 8 items

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test1

SysMO DB

No description specified

Creator: Guest

Contributor: Guest

Model type: Not specified

Model format: SBML

Environment: Not specified

Organism: Not specified

Investigations: No Investigations

Studies: No Studies

Modelling analyses: No Modelling analyses

Scales: Not specified

Download

Created: 4th Jun 2017 at 20:42, Last updated: 5th Jun 2017 at 16:26

2 hidden items

Longitudinal anthropometry of children and adolescents using 3D-body scanning.

SysMO DB

Abstract (Expand)

3D-body scanning anthropometry is a suitable method for characterization of physiological development of children and adolescents, and for understanding onset and progression of disorders like overweight ...

Authors: H. Loeffler-Wirth, M. Vogel, T. Kirsten, F. Glock, T. Poulain, A. Korner, M. Loeffler, W. Kiess, H. Binder

Date Published: 14th Sep 2018

Journal: PLoS One

PubMed ID: 30212520

Citation: PLoS One. 2018 Sep 13;13(9):e0203628. doi: 10.1371/journal.pone.0203628. eCollection 2018.

Scales: Not specified

Created: 27th Mar 2019 at 11:27

Introducing Technical Aspects of Research Data Management in the Leipzig Health Atlas.

FAIRDOM training

Abstract (Expand)

Medical research is an active field in which a wide range of information is collected, collated, combined and analyzed. Essential results are reported in publications, but it is often problematic to ...

Authors: Guest, M. Lobe, S. Staubert

Date Published: 22nd Apr 2018

Journal: Stud Health Technol Inform

PubMed ID: 29677996

Citation: Stud Health Technol Inform. 2018;247:426-430.

Scales: Not specified

Created: 25th Mar 2019 at 16:30

Evolving BioAssay Ontology (BAO): modularization, integration and applications

SysMO DB

Abstract:

Not specified

Authors: Saminda Abeyruwan, Uma D Vempati, Hande Küçük-McGinty, Ubbo Visser, Amar Koleti, Ahsan Mir, Kunie Sakurai, Caty Chung, Joshua A Bittker, Paul A Clemons, Steve Brudz, Anosha Siripala, Arturo J Morales, Martin Romacker, David Twomey, Svetlana Bureeva, Vance Lemmon, Stephan C Schürer

Date Published: 2014

Journal: J Biomed Sem

DOI: 10.1186/2041-1480-5-S1-S5

Citation: J Biomed Sem 5(Suppl 1) : S5

Scales: Not specified

Created: 1st Jun 2015 at 17:45, Last updated: 1st Jun 2015 at 17:47

Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge

SysMO DB

Abstract (Expand)

BACKGROUND: The bacterial communities of the nasopharynx play an important role in upper respiratory tract infections (URTIs). Our study represents the first survey of the nasopharynx during a known, ...

Authors: E. K. Allen, Firstname Lastname, J. O. Hendley, S. D. Turner, B. Winther, M. M. Sale

Date Published: 25th Jun 2014

Journal: Microbiome

PubMed ID: 25028608

Citation:

Scales: Not specified

Created: 18th Jul 2014 at 18:23

The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels

SysMO DB

Abstract (Expand)

The African annual fish Nothobranchius furzeri has over recent years been established as a model species for ageing-related studies. This is mainly based on its exceptionally short lifespan and the ...

Authors: Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer

Date Published: 16th Mar 2013

Journal: BMC Genomics

PubMed ID: 23496936

Citation:

Scales: Not specified

Created: 6th Jun 2013 at 18:23

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