Biological problem addressed 'Model Analysis Type'

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Current Biological problem addressed

Current Biological problem addressed

Model Analysis Type
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Metabolism (3) | Metabolic Redesign (0) | Metabolic Network (1) | Stress Response (0) | Post Translational Modification (0) | Enzymology (0) | Gene Expression (0) | Gene Regulatory Network (0) | Genome Scale (0) | Translation (0) | Signal Induction (0) | Cell Cycle (0) | Materials Science (0)

Related assays

12 Assays visible to you, out of a total of 23

Glycolysis in Saccharomyces cerevisiae

SysMO DB

Glycolysis in Saccharomyces cerevisiae

Submitter: Guest

Biological problem addressed: Metabolism

Investigation: Growth control of the eukaryote cell: a systems...

Study: Can yeast glycolysis be understood in terms of ...

Organisms: Saccharomyces cerevisiae (chemostat)

Models: Teusink and 1 hidden item

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Scales: Not specified

Created: 5th Jul 2010 at 14:30, Last updated: 26th Oct 2017 at 09:57

Time dependent responses of glycolytic intermediates in a detailed glycolytic model of Lactococcus lactis during glucose run-out experiments

SysMO DB

Detailed glycolytic model in Lactococcus lactis

Submitter: Katy Wolstencroft

Biological problem addressed: Metabolic Network

Investigation: Glycolitic Flux in Lactococcus lactis

Study: The effects of Redox Charge on Glycolytic Flux

Organisms: Lactococcus lactis (chemostat)

Models: Lactococcus lactis glycolysis

SOPs: No SOPs

Data files: Neves_timeSeries

Snapshots: No snapshots

Scales: Not specified

Created: 8th Aug 2011 at 14:03, Last updated: 26th Oct 2017 at 09:57

Glycerol Synthesis Model construction

SysMO DB

A kinetic model of the glycerol synthesis pathway has been constructed. Kinetic parameters were collected from published values. Maximal enzyme activities and intracellular effector concentrations were determined experimentally.

Submitter: Katy Wolstencroft

Biological problem addressed: Metabolism

Investigation: Glycerol Synthesis in Saccharomyces cerevisiae

Study: Glycerol Synthesis Pathway

Organisms: Saccharomyces cerevisiae

Models: Metabolic Control Analysis of Glycerol Synthesi...

SOPs: No SOPs

Data files: Cronwright Parameter Data

Snapshots: No snapshots

Scales: Not specified

Created: 19th Aug 2011 at 09:23, Last updated: 26th Oct 2017 at 09:57

Modelling temperature dependent degradation of GAP and DHAP

SulfoSys

The temperature dependent degradation of DHAP and GAP is modelled as an exponential decay process using experimental data for the disintegration at 70C.

Submitter: Jacky Snoep

Biological problem addressed: Metabolism

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Model gluconeogenesis

Organisms: No organisms

Models: DHAP T degradation, GAP T degradation

SOPs: No SOPs

Data files: Model simulation and Exp data for DHAP T deg, Model simulation and Exp data for GAP T deg, T degradation DHAP, T degradation GAP

Snapshots: No snapshots

Scales: Not specified

Created: 29th Jan 2013 at 21:05, Last updated: 26th Oct 2017 at 09:57

SulfoSys

Mathematical model for FBPAase kinetics, saturation of GAP and DHAP

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Model gluconeogenesis

Organisms: Sulfolobus solfataricus : P2 (wild-type / wild-type)

Models: FBPAase kinetic model

SOPs: No SOPs

Data files: FBPA/ase kinetics DHAP, FBPA/ase kinetics GAP, Model simulation and experimental data for DHAP...

Snapshots: No snapshots

Scales: Not specified

Created: 1st Feb 2013 at 21:47, Last updated: 26th Oct 2017 at 09:57

SulfoSys

Mathematical model for PGK kinetics, saturation with ADP, ATP, 3PG and BPG.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Model gluconeogenesis

Organisms: Sulfolobus solfataricus : P2 (wild-type / wild-type)

Models: 1 hidden item

SOPs: No SOPs

Data files: Model simulation and experimental data for ADP,..., PGK kinetics 3PG, PGK kinetics ADP, PGK kinetics ATP, PGK kinetics BPG

Snapshots: No snapshots

Scales: Not specified

Created: 1st Feb 2013 at 22:44, Last updated: 26th Oct 2017 at 09:57

SulfoSys

Mathematical model for GAPDH kinetics, saturation of GAP, BPG, NADP, NADPH and Pi.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Model gluconeogenesis

Organisms: Sulfolobus solfataricus : P2 (wild-type / wild-type)

Models: GAPDH kinetic model

SOPs: No SOPs

Data files: GAPDH kinetics 3PG, GAPDH kinetics GAP, GAPDH kinetics NADP, GAPDH kinetics NADPH, GAPDH kinetics Pi and 1 hidden item

Snapshots: No snapshots

Scales: Not specified

Created: 1st Feb 2013 at 23:11, Last updated: 26th Oct 2017 at 09:57

SulfoSys

Mathematical model for TPI kinetics, saturation of GAP and DHAP.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Model gluconeogenesis

Organisms: Sulfolobus solfataricus : P2 (wild-type / wild-type)

Models: TIM kinetic model

SOPs: No SOPs

Data files: Model simulation and exp data for TIM kinetics,..., TPI kinetics DHAP, TPI kinetics GAP, TPI kinetics PEP inhibition GAP, TPI kinetics PEP inhibition of DHAP

Snapshots: No snapshots

Scales: Not specified

Created: 1st Feb 2013 at 23:26, Last updated: 26th Oct 2017 at 09:57

Gluconeogenic model

SulfoSys

Mathematical model for the analysis of carbon loss of BPG, GAP and DHAP in reconstituted system of S. solfataricus at 70C.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Model gluconeogenesis

Organisms: Sulfolobus solfataricus : P2 (wild-type / wild-type)

Models: Mathematical model for the combined four enzyme...

SOPs: No SOPs

Data files: Metabolite concentrations during reconstituted ...

Snapshots: No snapshots

Scales: Not specified

Created: 2nd Feb 2013 at 13:21, Last updated: 26th Oct 2017 at 09:57

Model reconstituted system

SulfoSys

Mathematical model for the reconstituted system with PGK, GAPDH, TPI and FBPAase.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Carbon loss at high T

Organisms: Sulfolobus solfataricus : P2 (wild-type / wild-type)

Models: Mathematical model for the combined four enzyme...

SOPs: No SOPs

Data files: Metabolite concentrations during reconstituted ..., Model simulation and Exp data for reconstituted...

Snapshots: No snapshots

Scales: Not specified

Created: 2nd Feb 2013 at 16:32, Last updated: 26th Oct 2017 at 09:57

Modelling pathway optimisation

SulfoSys

Varying the relative amounts of PGK and FBPAase and analyse the 3PG uptake and F6P production rates.

Submitter: Jacky Snoep

Biological problem addressed: Model Analysis Type

Investigation: Central Carbon Metabolism of Sulfolobus solfata...

Study: Pathway optimisation

Organisms: Sulfolobus solfataricus : P2 (wild-type / wild-type)

Models: Mathematical model for the combined four enzyme...

SOPs: No SOPs

Data files: FBPAase titration of reconstituted system, Model simulation and experimental data for PGK ..., PGK titration of reconstituted system, Pathway efficiency for 3PG to F6P conversion as...

Snapshots: No snapshots

Scales: Not specified

Created: 3rd Feb 2013 at 09:56, Last updated: 26th Oct 2017 at 09:57

SysMO DB

Find some moths

Submitter: Guest

Biological problem addressed: Model Analysis Type

Investigation: The moth investigation

Study: The moth study

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Moth data

Snapshots: No snapshots

Scales: Organism

Created: 5th Jun 2015 at 09:29, Last updated: 26th Oct 2017 at 09:57

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